PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0447s00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 331aa    MW: 37134.9 Da    PI: 4.4447
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0447s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.1e-12168211654
                        HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Vradi0447s00010.1 168 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 211
                        589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-15164223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9168211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-15169222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.11E-5169215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MELSQLGFLE ELVAPRRETW NALSSGFLEL LSNGWSFDTF LENPSFPISN TLFGAFSAPI  60
DRRFECPFTN EVPPYPFPDA FTMSLPELEP GNDDPSPPLP PTLEDEDIGF YHTNNNNFQE  120
IKSVCKVEEH GVENLQATEI PLFNTAMSDD VERKDKSKKL EGQPSKNLMA ERRRRKRLND  180
RLSMLRSIVP KISKMDRTSI LGDTIDYMKE LLERIGKLQE QEVEEGSSQI NLLGISKDQL  240
KPNEAIFDVE RRGQDTRISI CCATKPGLLL STVNTLEALG LEIQQCVVSS FNDFSVEASC  300
SEVGEQRNSI SPEEIKQSLF RNAGFGGKCL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170177ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014524363.10.0PREDICTED: transcription factor bHLH61-like
SwissprotQ9LSL14e-76BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0S3R3330.0A0A0S3R333_PHAAN; Uncharacterized protein
STRINGGLYMA08G37240.11e-152(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-77beta HLH protein 93